Frédéric Bonnet
Research engineer, Physicist, Mathematician and Computer Scientist HPC and System Administrator
Driving License
Grenoble (France) France
Professional Status
Student
Available
About Me
Physicist, mathematican and computer scientist specilized in HPC, System administration and Cybersecurity.
Research Software Engineer (RSE)
Swansea University
August 2024
to December 2025
- Software Development Bash/Python/C/C++/GPU
- Particle physics, Lattice Gauge theory and Lattice QCD. HPC.
- Installation on the different machines within the cluster and different clusters (EuroHPC).
- Non-commutative geometry.
- Theoretical Physics.
- Tests and Benchmarks.
System Administrator/Scientific Computing Specialist
Leiden University
December 2019
to December 2022
- System adminstrator
Postdoctoral Fellow / Research Scientist
Yale University
August 2017
to June 2019
- Algorithm development, methods in Python/ CUDA C/ C++/C for resolution analysis in Cryo-EM.
- Parallelisation of the ResMap application onto GPU/CPU. GPU-release of ResMap used for
computation of local resolution of density maps in Cryo-EM. Achieved 5-16X speedup of application. - 3D reconstruction in Cryo-EM. Resolution analysis implementation of many different methods.
- Research in image processing for cryo-EM. Algorithm development, GPU programming.
Research Fellow
Monash University
February 2015
to August 2017
- Methodology Algorithm development
Consultant
Intitek/Bull
March 2013
to July 2013
Full-time
Echirolles
France
- Developement of an SR-IOV driver under the AIX Linux kernel in C
Research engineer Postdoctoral
CEA
January 2011
to January 2013
Full-time
Grenoble
France
- High performance Computing (GPU/CPU architecture), Grid Computing (GridBeans in Java), condense matter physic, nano technology.
- Parallelization of the serial code onto a Hybrid architecture CPU/GPU using CUDA C.
- GridBean development in JAVA in the UNICORE project. Integration of application in the UNICORE project (Grid Computing Rich Client). Development of multiple graphical interfaces using SWING, AWT classes.
IT Graduate 2010 (e-Business)
Department of Innovation, Industry, Science and Research
January 2010
to August 2010
Full-time
Canberra
Australia - Australian Capital Territory
- IT graduate, software development and network management.
- Management of web services.
Researcher
School of Electrical and Electronics Engineering, University of Adelaide
November 2003
to August 2008
Full-time
Adelaide
Australia - South Australia
- Complex systems studies, financial engineering, derivatives, quantum field theory, game theory, Telecommunication, Electrical engineering.
- Research in financial engineering using methods in HPC and a direct application of quantum field theory. This is done using path integrals to contribute to financial mathematics to evaluate a fair price for diverse option such as European, Exotic and American options.
Postdoctoral Research Fellow
University of Regina and Jefferson Laboratory (USA)
September 2002
to September 2003
Full-time
Regina
Canada - Saskatchewan
- Lattice QCD, data analysis. Study of the pion form factor.
Lic Pro. Administrateur de system et Reseau
Universite de Perpignan via Dominitia
September 2023
to July 2024
- Cybersecurity
- System administration in both Linux and Windows systems.
Doctor of Philosophy (PhD)
School of Electrical and Electronics Engineering, University of Adelaide, Adelaide, 5005, SA, Austra
September 2004
to August 2008
- Complex systems studies, financial engineering, derivatives, quantum field theory, game theory.
- Telecommunication, Electrical engineering.
- Research in financial engineering using methods in HPC and a direct application of quantum field theory.
- This is done using path integrals to contribute to financial mathematics to evaluate a fair price for diverse option such as European, Exotic and American options.
Doctor of Philosophy (PhD)
CSSM, Department of Physics, University of Adelaide, Adelaide, 5005, SA, Australie.
September 1998
to December 2001
- Theoretical and Mathematical Physics
- High Performance Computing (HPC)
- Improved actions in lattice QCD: http://digital.library.adelaide.edu.au/dspace/handle/2440/45714
Honors degree
Department of Physics, University of Adelaide, Adelaide, 5005, SA, Australie
January 1997
to November 1997
- Mathematical physics
- Theoretical Physics
Bachelor's degree
School of Mathematical and Computer Science, The University of Adelaide, Adelaide, 5005, SA, Austral
September 1993
to November 1996
Mathematical and computer science.
Majored:
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Majored:
- Pure mathematics
- Statistics
- Mathematical Physics
- Theoretical Physics.
- 2005-2008 ARC discovery grant (co researcher).
- 2004-2007 Divisional scholarships (Electrical and Electronic Engineering and Mathematics Department).
- 2005 Society of Photographic Instrumentation Engineers (SPIE) Travel scholarships.
- 1998-2001 Departmental scholarships (Physics Department and Special Research Centre for the Subatomic Structure of Matter).
- Former member of the International Society for Optics and Photonics and the Society of Photographic Instrumentation Engineers (see http://spie.org)
- Former member of the Australian Institute of Physics (AIP)
- Former member of the National Institute of Theoretical Physics (NITP).
- Current member of the Australian Research Council Complex Open Systems Research Network COSNet.
- Current member of Engineers of Australia
- Able to work in a team with rigor, motivation and dynamics.
- Curious : strong desire to learn and discover new technologies as well as extend my personal development. Innovator and creative.
- Research, conception and software development.
- Kernel development on GPU in CUDA-C and OpenCL.
- Software engineering in multiple languages (Bash/Python/f90, C/C++/CUDA-C, Java, OpenMP, OpenCL).
- Development and modification of Makefile/CMake/Bootstrap.
- Connection and linking with libraries MPI/MPI-2, CUBLAS, Lapack, Blas, OpenCL, Magma etc...
- Tests and benchmark of algorithms and applications on CPU and hybrid CPU/GPU machines.
- Data analysis.
- Analysis and parsing of output files in JSon, Yaml, XML/CML construction of classes and packages in Java.
- Development of algorithms.
- Development of GUI interfaces and GridBean in Java.
- Able to work in a team dynamically with rigor and motivation to resolve software engineering problems and bugs.
- Curious : strong desire to learn and discover new technologies as well as extend my personal development. Innovator and creative.
- LANGUAGES : F77, F90, C, C++, Java, MPI/MPI-2, CUDA C, OpenCL, OpenHMPP, OpenMP, HTML, XML/CML, YAML, Python, Perl, C#, Q#, Cirq, and some Qiskit
- SYSTEMES : Windows, Mac OS, linux, UNIX.
- NETWORKS : Modbus, Ethernet, TCP/IP
- SOFTWARE : Word, Excel, PowerPoint, LibreOffice suite, Latex, Mathematica, Physica, AVS Express, ROOT/PROOF.
- TOOLS : Eclipse, Netbean, MatLab, Git, SVN.
- Development of Quantum algorithms. Theoretical development from physics, languages used Cirq, Q#, MyQLM
- Particles physics. Theoretical and mathematical physics. Statistical physics. Lattice QCD.
- Modeling, algorithms, numerical analysis.
- Numerical simulation on machines with parallel architecture with Monte Carlo methods.
- Data analysis.
- Phenomenological system in the theory of strong interactions.
- Modeling and visualization of complex physical system.
- Management of the production simulations over a forecast period of time. The results were then published in international journals (Physical Review D).
- DFT methods for molecular systems and tight binding ab initio methods for transport in condensedmatter physics.
- Presentation of results via oral and written presentation.
- Can adapt to an abstract formalism. Follow methodological and rigorous procedures. Integrate diversified information from different sources. Analyze and synthesize some scientific information and techniques. Respect the confidentiality of the information. Follow rules within the organization.
- Differential geometry. Ordinary and partial differential equations. Topology. Group theory: Abelian and non-Abelian. Lie Algebras and Lie groups, non-commutative geometry. Distribution theory. Stochastic calculus, financial mathematics, stochastic processes. Time series and econometrics. Integral equation and integration theory, as well as numerical integration. Discretisation methods. Statistical methods. Non-commutative geometry.
- EuroHPC User Days 2025 – Invinted speaker in the HEP session.
- Lattice 2024 – Liverpool University
- GridKA School 2012. Cloud and Grid computing – KIT
-
Summer school: “towards petaflop numerical simulation on parallel hybrid
architecture” - INRIA - Workshop/Training on the use of GPU CCRT - CEA-CCRT
- Formation MPI/OpenMP at CCRT - CEA-CCRT